wikipathways 3 tools

MCP server exposing 3 tools for wikipathways.

Endpoint

This URL is a JSON-RPC 2.0 endpoint over HTTP. Issue POST requests with a JSON-RPC body. Browsers and search crawlers land here on GET.

POST https://gateway.pipeworx.io/wikipathways/mcp
Content-Type: application/json

{"jsonrpc":"2.0","id":1,"method":"tools/list"}

search_pathways — Search WikiPathways (open community pathway database) for biological pathways by name. Pathways map genes/proteins/metabolites in processes like glycolysis, apoptosis, or signaling. Optionally restrict to one organism by Latin or common name. Keyless. Complements KEGG/Reactome.
list_pathways — List all WikiPathways pathways for a single organism. Give a Latin or common name, e.g. "Homo sapiens", "human", or "mouse". Returns each pathway's id, name, link, and last revision. Keyless.
get_pathway — Get metadata and a viewer link for one WikiPathways pathway by its WikiPathways id (e.g. "WP554"). Returns name, species, revision, and a human-viewable diagram URL. Keyless.

Code samples (curl / TypeScript / one-click client install), schemas, and the live playground are on the pack page:
https://pipeworx.io/packs/wikipathways/

Pipeworx is an open MCP gateway connecting AI agents to live data. pipeworx.io