MCP server exposing 5 tools for monarch-initiative.
This URL is a JSON-RPC 2.0 endpoint over HTTP. Issue POST requests with a JSON-RPC body. Browsers and search crawlers land here on GET.
POST https://gateway.pipeworx.io/monarch-initiative/mcp
Content-Type: application/json
{"jsonrpc":"2.0","id":1,"method":"tools/list"}search — Full-text search across the Monarch biomedical knowledge graph for diseases, genes, phenotypes, and other biolink entities by query string; filter by category (e.g. biolink:Disease) and paginate with limit/offset.entity — Single node by curie (e.g. "MONDO:0007947").associations — Fetch biolink associations (edges) involving a Monarch entity by its CURIE ID (e.g. MONDO:0007947); filter by association category (e.g. biolink:DiseaseToPhenotypicFeatureAssociation), predicate, or direction (subject/object/both).phenotype_to_gene — Genes annotated to a phenotype (HP:… id).gene_to_disease — Diseases associated with a gene (NCBIGene:… or HGNC:… id).Code samples (curl / TypeScript / one-click client install), schemas, and the live playground are on the pack page:
https://pipeworx.io/packs/monarch-initiative/
Pipeworx is an open MCP gateway connecting AI agents to live data. pipeworx.io