gdc 4 tools

MCP server exposing 4 tools for gdc.

Endpoint

This URL is a JSON-RPC 2.0 endpoint over HTTP. Issue POST requests with a JSON-RPC body. Browsers and search crawlers land here on GET.

POST https://gateway.pipeworx.io/gdc/mcp
Content-Type: application/json

{"jsonrpc":"2.0","id":1,"method":"tools/list"}

list_projects — List NCI Genomic Data Commons cancer-genomics projects (TCGA, TARGET, CPTAC, etc.), ranked by case count. Returns project_id, name, program, primary site(s) and disease type(s). Keyless, open-access metadata.
get_project — Look up a single NCI GDC project by project_id (e.g. "TCGA-BRCA") and get its details plus summary counts (case_count, file_count). Keyless, open-access metadata.
search_cases — Search NCI GDC cancer cases (patients/samples) by primary site and/or project. Returns case_id, submitter_id, primary site, disease type and project_id. Keyless, open-access metadata.
search_files — Search NCI GDC genomic data files by project and/or data category (e.g. "Transcriptome Profiling", "Simple Nucleotide Variation", "DNA Methylation"). Returns file_id, file_name, data category/type/format, access level and file size. Keyless, open-access metadata.

Code samples (curl / TypeScript / one-click client install), schemas, and the live playground are on the pack page:
https://pipeworx.io/packs/gdc/

Pipeworx is an open MCP gateway connecting AI agents to live data. pipeworx.io