bioregistry 4 tools

MCP server exposing 4 tools for bioregistry.

Endpoint

This URL is a JSON-RPC 2.0 endpoint over HTTP. Issue POST requests with a JSON-RPC body. Browsers and search crawlers land here on GET.

POST https://gateway.pipeworx.io/bioregistry/mcp
Content-Type: application/json

{"jsonrpc":"2.0","id":1,"method":"tools/list"}

Tools

• prefix — Fetch full Bioregistry metadata for a biological database prefix (e.g. "chebi", "hpo", "uniprot"), including canonical URI pattern, synonyms, homepage, and cross-registry mappings.
• search — Search Bioregistry for biological database prefixes by substring match against prefix name, title, or description (e.g. "gene ontology"). Returns up to `limit` matching prefix records.
• resolve — Resolve a CURIE (prefix:id) to a provider URL.
• prefixes — Paginate over all registered Bioregistry prefixes (2,000+); returns full prefix records for each entry. Use limit/offset to page through the complete registry.

Full documentation

Code samples (curl / TypeScript / one-click client install), schemas, and the live playground are on the pack page:
https://pipeworx.io/packs/bioregistry/

About Pipeworx

Pipeworx is an open MCP gateway connecting AI agents to live data. pipeworx.io