alphafold 4 tools

MCP server exposing 4 tools for alphafold.

Endpoint

This URL is a JSON-RPC 2.0 endpoint over HTTP. Issue POST requests with a JSON-RPC body. Browsers and search crawlers land here on GET.

POST https://gateway.pipeworx.io/alphafold/mcp
Content-Type: application/json

{"jsonrpc":"2.0","id":1,"method":"tools/list"}

Tools

• prediction — Full prediction metadata + structure file URLs (PDB, CIF, PAE).
• summary — Short summary for a prediction (organism, sequence, mean pLDDT).
• annotations — Sequence-level annotations (e.g. MUTAGEN, LOW_CONFIDENCE_REGIONS).
• uniprot — Fetch AlphaFold structure prediction metadata (PDB/CIF/PAE download URLs, pLDDT scores) by UniProt accession (e.g. "P00533"); equivalent to `prediction` but takes uniprot_id explicitly.

Full documentation

Code samples (curl / TypeScript / one-click client install), schemas, and the live playground are on the pack page:
https://pipeworx.io/packs/alphafold/

About Pipeworx

Pipeworx is an open MCP gateway connecting AI agents to live data. pipeworx.io